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Sustainable Farming - Above Ground

Meet the Microbes 


that Shape

What We Eat

Farming with Microbes: The Hidden Power Beneath Our Feet.

In regenerative farming, crops, animals and microbes work together to build strong ecosystems. Healthy soil and plants, happy animals and cleaner air all start with balanced interactions between microbes and all other parts of any ecosystem. Microbes in manure and compost, and on leaves and plant roots make things grow better.

For example, all Arbuscular mycorrhizal fungi are obligately symbiotic soil fungi which colonize the roots of the majority of plants. Sustainable farming isn’t just better for the planet — it makes food tastier, fresher and more nutritious.

Future of Food
Future of Food
Scientists are researching how to harness beneficial microbes to improve crop yields, reduce the use of pesticides and fertilizers, and create healthier, more eco-friendly foods.
Ecosystem Balance
Ecosystem Balance
Healthy microbial diversity in the environment helps plants resist disease, improves soil structure, and increases soil carbon sequestration, water holding capacity, and resistance to erosion. This allows ecosystems to adapt to harsh weather conditions and keeps the food chain stable. Protecting these tiny allies is key to sustainable agriculture.
Sustainable agriculture with microbes
Ditte Hededam Welner
Senior Researcher, GRoup Leader
Pesticides & Chemicals
Pesticides & Chemicals
Overuse of chemicals can kill beneficial microbes, harming soil fertility and food production over time.
Threats to Microbes
Threats to Microbes
Monoculture Farming: Growing just one crop over large areas can reduce microbe diversity in the soil.
Monoculture pesticide enabled farming

Big Machines

Big Fields

But Not Big on Life

Monoculture farming looks efficient — but it comes at a cost.

Growing one crop in one field is also easier to be eaten up by pests and more likely to deplete the nutrients in the soil compared to multispecies communities. This depletes the land of diversity. Fewer insects, less wildlife, and more chemicals lead to weak ecosystems and weaker food. Without a variety of life, the land stops giving back. It’s not the future we need.

Speedy Connection?
Speedy Connection?
Mycorrhizal fungi connect plant roots in vast underground networks, trading water and minerals for sugars. It’s nature’s version of Wi-Fi.
Microbes Eat Waste, Make Life
Microbes Eat Waste, Make Life
Bacteria break down dead plants into the building blocks of life – turning yesterday’s waste into tomorrow’s harvest.
Engineer Earthworms
Engineer Earthworms
When earthworms dig, they aerate the soil and spread helpful microbes – boosting root growth and making nutrients easier to reach.
Sustainable microbe supported soil

The

Underground Network

That Feeds Us

Beneath healthy soil lies a buzzing microbial world.

Tiny organisms – bacteria, fungi, and worms – break down organic matter, recycle nutrients, and feed plant roots. Fungi and bacteria also act on inorganic matter: fungi break down rocks to provide plants with phosphorus and bacteria can fix nitrogen from the air.

They’re nature’s invisible workforce and without them, farming wouldn’t work. Protecting these underground allies is key to growing food without harming the Earth.

 Lonely Roots
 Lonely Roots
In depleted soil, roots miss their microbial partners – no fungi to fetch nutrients, no bacteria to support growth.
Pesticides Don’t Choose Sides
Pesticides Don’t Choose Sides
Many chemicals kill good microbes along with pests, breaking the natural nutrient production cycles and weakening plant defenses.
Starving Soil
Starving Soil
Without insects, decaying plants and microbes, soil becomes lifeless dust – unable to hold water or grow strong crops.
Monoculture pesticide enabled soil

Dead Dirt

Can't Feed a Living Planet

Under monoculture fields, the soil tells a darker story:

Compacted, lifeless, and soaked in pesticides. The microbes that once helped plants grow are gone, replaced by chemicals that do more harm than good. If we lose our soil, we lose our future. It’s time to advocate for farming that brings the underground world back to life.

Sustainable Farming - Above Ground
Monoculture pesticide enabled farming
Sustainable microbe supported soil
Monoculture pesticide enabled soil

It's tasty! It's gooood.

It's made by microbes.

Meet the foods that wouldn’t exist without microbes! From tangy sourdough to rich chocolate, these tiny organisms work behind the scenes to ferment and create flavors and textures we love. Let’s explore how they turn simple ingredients into culinary magic!

asian-food-soup
Explore Microbial Food
Microbial Foods
Leonie Johanna Jahn
Researcher, Co-PI
Heavy stuff
Heavy stuff
Microbial mass in your body weighs the same as your brain or kidney. A person houses 39 trillion microbes - yes 39,000,000,000,000 microbes! That means that for each human cell there are 10 microbes in the body.
Probiotic Power
Probiotic Power
Certain bacteria are probiotics, that is they stimulate the growth of microorganisms, especially those with beneficial properties. This helps balance our gut microbiome and boosts the immune system.
Gallbladder
Gallbladder
The primary function of the gallbladder is to store and concentrate the bile produced from cholesterol by the liver. This bile is then released into the duodenum (the first part of the small intestine) to aid digestion and absorption of fats. The gallbladder also plays a role in regulating the flow of bile and in protecting the liver and other parts of the digestive system.
Small Intestine
Small Intestine
The small intestine is a hollow, tubular structure with an average adult length of 7 meters and as wide as a finger (2-3 cm). Here is where the majority of digestion occurs. Processing a single meal through the complete length of the small intestine takes up to 5 hours, breaking down and absorbing 95% of food nutrients and water. To do this it receives bile from the gallbladder and enzymes from the pancreas. The small intestine extracts excess water for disposal and sends the remaining food waste to the large intestine to form poo.
Liver
Liver

The liver regulates most chemical levels in the blood and excretes a product called bile. This helps carry away waste products from the liver into urine and poo. At the same time, all the blood leaving the stomach and intestines passes through the liver. The liver processes this blood and breaks down, balances, and creates the nutrients the body needs and metabolizes medicines/ alcohol/ toxins into forms that are easier to use for the rest of the body or that are nontoxic. It provides more than 500 vital functions.

Large Intestine (Colon)
Large Intestine (Colon)
The large intestine is on average a 152 m long and 8 cm wide hollow muscle. It is responsible for processing indigestible food material after most nutrients are absorbed in the small intestine. The large intestine performs an essential role, absorbing water, vitamins and electrolytes from waste material. The dry material that is left is excreted as poo.
Stomach
Stomach
The stomach is a muscular hollow organ between 20 and 30 centimeters long that can hold about 1.5 liters of food and drink. When your stomach receives food, it contracts and produces acids and enzymes that break down food into small molecules. When your stomach has broken down food, it passes it to your small intestine. Food normally stays in the stomach 2-4 hours.
Stomach
Stomach
The stomach is a muscular hollow organ between 20 and 30 centimeters long that can hold about 1.5 liters of food and drink. When your stomach receives food, it contracts and produces acids and enzymes that break down food into small molecules. When your stomach has broken down food, it passes it to your small intestine. Food normally stays in the stomach 2-4 hours.
The human digestive system illustration

Mad about food?

Or mad because of food?

As food travels through your body, microbes hitch a ride to your gut, where they mix with your microbiome, the millions of bacteria that each person has living in their stomach and intestines.

Each person's microbiome is unique and accompanies you throughout your life. Microbes help you break down complex nutrients, create nutrients for you and make it easier for your body to absorb essential vitamins and minerals.

They also support your immune system, keep harmful bacteria in check and even influence your mood through the gut-brain connection. Every meal you eat isn’t just fuel — it’s feeding trillions of tiny allies, keeping your digestion smooth and your body balanced.

What you eat fuels your brain and mood. Food affects your mitochondria — the tiny powerhouses in your cells that create energy. When they get the right nutrients, your body runs better and your mood lifts. Poor food? Low energy, foggy brain, and cranky vibes. Eat well, feel better.
Feed your mood
Feed your mood
Your gut is home to over 1,000 different microbial species! Among them are Bacteroides, which help break down plant fibers, Lactobacillus, known for aiding digestion and producing lactic acid and Methanobrevibacter, which helps process fermentation gases. All work together to keep your gut healthy.
A Microbial Metropolis Inside You
A Microbial Metropolis Inside You
The Gut Microbiome
Morten O. A. Sommer
Professor, Scientific Director

Life is all about balance, and microbes are the ultimate masters of it.

They build ecosystems, break down waste, feed plants and even help us stay healthy. Whether in the soil, in our food, or inside our bodies, they work behind the scenes to keep everything thriving. But there’s still so much we don’t know.

The choices we make today — how we grow food, how we use science, how we protect biodiversity — will shape the future of our planet.

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What process makes sauerkraut sour and long-lasting?

Which of these foods is NOT traditionally fermented with microbes?